DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0022717
GeneYrdc
SynonymsIRIP
Desc.yrdC domain containing (E.coli)
LocusNM_153566 chr4:124528003-124532486(+)
DB links


Entrez 230734
MGI 2387201
Ensembl ENSMUSG00000028889
Vega OTTMUSG00000009199
Featureprotein-coding
GO(BP)
  •   1 Terms
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2023370
(v2.0)
YrdcNM_153566230734
8.561163.8866210.454585.4905133.55217.809314.78078.44979117.98323.6978
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0022717
(v1.0)
Yrdc230734
MGA0.97773
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023370
(v2.0)
Yrdc230734
870/5080.2629511/508-0.1075240/5082.4912484/5081.257311/508-3.3577167/508-2.1941
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023370
(v2.0)
Yrdc230734
471/1820.8554266/1820.4292223/1823.8075428/1822.54852/182-3.897791/182-1.5834
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023370
(v2.0)
Yrdc230734
66.010414545.52
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023370
(v2.0)
Yrdc230734
20.2449022.49
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022717
(v1.0)
YrdcNM_153566230734
4.041467.2600763.667892.752510.6459
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022717
(v1.0)
YrdcNM_153566230734
4.833068.1543876.9383112.04416.1905
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0022717
(v1.0)
YrdcNM_153566230734
4.225713.13097.9209
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0022717
(v1.0)
YrdcNM_153566230734
4.124717.187176.25387
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0022717
(v1.0)
YrdcNM_153566230734
55.312340.1273
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0022717
(v1.0)
YrdcNM_153566230734
4.228173.088026.85903
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0022717
(v1.0)
YrdcNM_153566230734
58.946589.556281.387
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0022717
(v1.0)
YrdcNM_153566230734
110.83199.6206
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0022717
(v1.0)
YrdcNM_153566230734
1.3725228.0548
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0022717
(v1.0)
YrdcNM_153566230734
6.19715.51574
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0022717
(v1.0)
1434744_atMm.258568YrdcNM_153566.2230734
00397.325565.75210.825
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0022717
(v1.0)
A_51_P218563BC023823NM_153566230734
11P1.0350.846P
0022717
(v1.0)
A_52_P254231BC023823NM_153566230734
11P1.3860.233P
Proteome N/A