DBTMEE:2019865
| Gene | Smarca2 |
| Synonyms | brm
Snf2l2 |
| Description | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 |
| Locus | NM_011416 UCSC: chr19:26679650-26852811(+) OLP: chr19:26679650-26852811(+)
NM_026003 UCSC: chr19:26822893-26852811(+) OLP: chr19:26822893-26852811(+)
|
| DB links |
Entrez 67155
MGI 99603
Ensembl ENSMUSG00000024921
Vega OTTMUSG00000040069
|
| Feature | protein-coding |
| GO_BP |
-
 12 Terms
chromatin organization (GO:0006325)
nucleosome assembly (GO:0006334)
transcription, DNA-templated (GO:0006351)
regulation of transcription, DNA-templated (GO:0006355)
transcription from RNA polymerase II promoter (GO:0006366)
nervous system development (GO:0007399)
negative regulation of cell proliferation (GO:0008285)
negative regulation of cell growth (GO:0030308)
aortic smooth muscle cell differentiation (GO:0035887)
negative regulation of transcription, DNA-templated (GO:0045892)
positive regulation of transcription, DNA-templated (GO:0045893)
positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
|
| GO_MF |
-
12 Terms
|
| GO_CC |
-
7 Terms
|
| KEGG | |
| Ver2_FPKM |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | ESC_FPKM | MEF_FPKM | p1C_FPKM | p4C_FPKM | iPSC_FPKM |
|---|
2019865
(v2.0) | Smarca2 | NM_011416,NM_026003 | 67155
| 21.992 | 51.924 | 119.483 | 26.6142 | 5.05793 | 2.55581 | 31.6931 | 91.4171 | 9.82614 | 4.2589 |
|
| SPR_Histone_Erkek_5KaroundTSS |
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2019865
(v2.0) | Smarca2 | 67155
| 1020/420 | 0.7659 | 709/420 | 0.638 | 300/420 | 3.0794 | 1015/420 | 2.5971 | 582/420 | 2.5167 | 2522/420 | 1.9842 |
|
| SPR_Histone_Erkek_2KaroundTSS |
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2019865
(v2.0) | Smarca2 | 67155
| 484/158 | 1.0974 | 305/158 | 0.8287 | 214/158 | 3.9387 | 654/158 | 3.3601 | 255/158 | 2.7165 | 1184/158 | 2.2991 |
|
| SPR_Methy_Kobayashi_5KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2019865
(v2.0) | Smarca2 | 67155
| 39.4669 | 281 | 14.05 |
|
| SPR_Methy_Kobayashi_2KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2019865
(v2.0) | Smarca2 | 67155
| 7.3649 | 174 | 4.23 |
|
| SOLiD_OocyteTo4C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno1C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno4C_FPKM_gene_guided |
N/A |
| Illumina_Oo_2C_FPKM_gene_guided |
N/A |
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
N/A |
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0019307
(v1.0) | 5219 | AI116863.1 | | Smarca2 | 20584
| U043718 | NAP012125-001 | 2610209L14Rik;Smarca2; | TC925874,TC925873 | Q9CTU8 | U,F,2 | 2.2105 | 2.2811 | 2.2326 | 2.0036 | 2.1457 | 1.9061 | 1.9975 |
|
| MOE430 |
N/A |
| Agilent44K |
N/A |
| Proteome |
N/A |
