DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0002989
GeneAtf1
Synonyms
Desc.activating transcription factor 1
LocusNM_007497 chr15:100058290-100091679(+)
DB links


Entrez 11908
MGI 1298366
Ensembl ENSMUSG00000023027
Vega OTTMUSG00000036768
Featureprotein-coding
GO(BP)
  •   6 Terms
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      positive regulation of neuron projection development (GO:0010976)
      cellular protein complex assembly (GO:0043623)
      positive regulation of DNA replication (GO:0045740)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
GO(MF)
  •   6 Terms
      DNA binding (GO:0003677)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity (GO:0003705)
      protein complex binding (GO:0032403)
      sequence-specific DNA binding (GO:0043565)
      protein heterodimerization activity (GO:0046982)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002893
(v2.0)
Atf1NM_00749711908
33.489935.186554.217172.380291.782219.71822.965862.984673.096323.0213
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0002989
(v1.0)
Atf111908
MGA0.93422
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002893
(v2.0)
Atf111908
650/4520.0113422/452-0.2148135/4521.8301389/4521.110414/452-2.8687199/452-1.7752
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002893
(v2.0)
Atf111908
295/1640.3324164/164-0.1155120/1643.0594334/1642.33983/164-3.335955/164-2.1451
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002893
(v2.0)
Atf111908
67.115810762.73
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002893
(v2.0)
Atf111908
16.66635331.45
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002989
(v1.0)
Atf1NM_00749711908
36.568737.544953.841263.603116.0716
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002989
(v1.0)
Atf1FR385635,NM_00749711908
40.82841.747241.495758.10518.8285
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0002989
(v1.0)
Atf1NM_00749711908
38.235912.247640.9623
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0002989
(v1.0)
Atf1NM_00749711908
37.32237.167946.6756
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0002989
(v1.0)
Atf1FR385635,NM_00749711908
84.5814200.941
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0002989
(v1.0)
Atf1NM_00749711908
38.258112.079851.1922
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0002989
(v1.0)
Atf1NM_00749711908
49.848661.411350.4322
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0002989
(v1.0)
Atf1FR385635,NM_00749711908
57.481240.9367
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0002989
(v1.0)
Atf1NM_00749711908
117.916324.598
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0002989
(v1.0)
Atf1NM_00749711908
22.056736.3521
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0002989
(v1.0)
16253K0347H05-3Mm.676Atf111908
U016666NAP095407-001TC943039,TC943037,TC854383P81269U,F,23.89963.76843.3553.55873.39683.33523.3656
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0002989
(v1.0)
1417296_atMm.676Atf1NM_007497.311908
376.85636.75722.7859.325488.9
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0002989
(v1.0)
A_52_P228079Atf1NM_00749711908
11P0.7770.26P
0002989
(v1.0)
A_52_P32756Atf1NM_00749711908
11P0.7870.251P
Proteome N/A