DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003061
GeneAtp5c1
SynonymsF1 gamma
Desc.ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
LocusNM_001112738 chr2:9977659-10002137(-)
NM_020615 chr2:9977659-10002137(-)
DB links


Entrez 11949
MGI 1261437
Ensembl ENSMUSG00000025781
Vega OTTMUSG00000011013
Featureprotein-coding
GO(BP)
GO(MF)
  •   3 Terms
      ATPase activity (GO:0016887)
      hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933)
      proton-transporting ATPase activity, rotational mechanism (GO:0046961)
GO(CC)
  •   6 Terms
      mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) (GO:0000275)
      mitochondrion (GO:0005739)
      mitochondrial inner membrane (GO:0005743)
      mitochondrial proton-transporting ATP synthase complex (GO:0005753)
      membrane (GO:0016020)
      proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002966
(v2.0)
Atp5c1NM_001112738,NM_02061511949
115.67240.418122.04590.0634147.198151.115165.76717.0806143.168170.883
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003061
(v1.0)
Atp5c111949
MGA0.97975
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002966
(v2.0)
Atp5c111949
679/4120.2075440/412-0.0213195/4122.4874370/4121.171314/412-2.736390/412-2.7734
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002966
(v2.0)
Atp5c111949
357/1710.5465192/1710.0506183/1713.6079349/1712.343610/171-1.935342/171-2.5822
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002966
(v2.0)
Atp5c111949
69.323914448.14
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002966
(v2.0)
Atp5c111949
17.67188820.08
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003061
(v1.0)
Atp5c1NM_001112738,NM_02061511949
42.001215.337567.1109102.101117.062
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003061
(v1.0)
Atp5c1NM_001112738,NM_02061511949
39.43225.531492.8213106.207128.837
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003061
(v1.0)
Atp5c1NM_001112738,NM_02061511949
43.916142.302316.7335
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003061
(v1.0)
Atp5c1NM_001112738,NM_02061511949
42.866515.183512.714
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003061
(v1.0)
Atp5c1NM_001112738,NM_02061511949
25.85627.88352
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003061
(v1.0)
Atp5c1NM_001112738,NM_02061511949
43.941641.722913.9443
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003061
(v1.0)
Atp5c1NM_001112738,NM_02061511949
62.134398.582298.5867
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003061
(v1.0)
Atp5c1NM_001112738,NM_02061511949
153.249107.818
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003061
(v1.0)
Atp5c1NM_001112738,NM_02061511949
11.248851.1357
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003061
(v1.0)
Atp5c1NM_001112738,NM_02061511949
49.10526.3481
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003061
(v1.0)
11466H3115H10-3Mm.12677Atp5c111949
Atp5c12.92473.163.24563.48842.98273.30063.2761
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003061
(v1.0)
1416058_s_atMm.12677Atp5c1NM_001112738.1,NM_020615.411949
870.9490.425992.32200.9753532.725
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003061
(v1.0)
A_51_P378087Atp5c1NM_02061511949
11P0.7350.199P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003061
(v1.0)
Atp5c111949
341481