DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004621
GeneChchd3
Synonyms
Desc.coiled-coil-helix-coiled-coil-helix domain containing 3
LocusNM_025336 chr6:32742227-33010152(-)
DB links


Entrez 66075
MGI 1913325
Ensembl ENSMUSG00000053768
Vega OTTMUSG00000014758
Featureprotein-coding
GO(BP)
  •   5 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      inner mitochondrial membrane organization (GO:0007007)
      mitochondrial fusion (GO:0008053)
GO(MF)
  •   4 Terms
      RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription (GO:0001227)
      protein binding (GO:0005515)
      phosphatase binding (GO:0019902)
      protein complex scaffold (GO:0032947)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004534
(v2.0)
Chchd3NM_02533666075
34.641232.462352.86415.110313.9353.721642.920242.77515.885959.7396
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004621
(v1.0)
Chchd366075
Minor ZGA0.99635
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004534
(v2.0)
Chchd366075
593/437-0.0722412/437-0.200754/4370.5714125/437-0.471296/437-0.1275622/437-0.0899
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004534
(v2.0)
Chchd366075
263/1830.0103179/183-0.147250/1831.6652108/1830.564110/183-2.030974/183-1.8842
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004534
(v2.0)
Chchd366075
63.266312152.29
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004534
(v2.0)
Chchd366075
22.41727729.11
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004621
(v1.0)
Chchd3NM_02533666075
33.733936.592411.23919.6297530.4074
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004621
(v1.0)
Chchd3FR262761,NM_02533666075
45.934447.970616.552614.020142.3463
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004621
(v1.0)
Chchd3NM_02533666075
35.271912.668639.9231
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004621
(v1.0)
Chchd3NM_02533666075
34.428936.22531.6652
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004621
(v1.0)
Chchd3FR262761,NM_02533666075
48.709644.5815
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004621
(v1.0)
Chchd3NM_02533666075
35.292412.495134.7294
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004621
(v1.0)
Chchd3NM_02533666075
10.40579.297910.9612
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004621
(v1.0)
Chchd3FR262761,NM_02533666075
13.868916.8802
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004621
(v1.0)
Chchd3NM_02533666075
8.225517.65705
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004621
(v1.0)
Chchd3NM_02533666075
5.023824.48135
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004621
(v1.0)
19689L0291F01-30610041L09Rik66075
U027142NAP004624-0010610041L09Rik;1700039J09Rik;TC941257,TC941256,TC941253Q91VG6U,F3.47933.4963.66433.57273.51673.71473.6125
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004621
(v1.0)
1451504_atMm.21501Chchd3NM_025336.166075
157.65011599.1286.65
0004621
(v1.0)
1431241_atMm.21501Chchd3NM_025336.166075
419.675412.575418.725102.6113.175
0004621
(v1.0)
1459143_atMm.21501Chchd3NM_025336.166075
0067.725100.27570.65
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004621
(v1.0)
A_51_P156902Chchd3NM_02533666075
11P1.0890.549P
0004621
(v1.0)
A_52_P598478Chchd3AK00664366075
11P0.9340.626P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004621
(v1.0)
Chchd366075
116116