DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010175
GeneHnrnpk
SynonymshnRNPK
Hnrpk
KBBP
Desc.heterogeneous nuclear ribonucleoprotein K
LocusNM_025279 chr13:58493312-58503877(-)
DB links


Entrez 15387
MGI 99894
Ensembl ENSMUSG00000021546
Vega OTTMUSG00000035894
Featureprotein-coding
GO(BP)
  •   9 Terms
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      mRNA processing (GO:0006397)
      RNA splicing (GO:0008380)
      regulation of low-density lipoprotein particle clearance (GO:0010988)
      positive regulation of low-density lipoprotein particle receptor biosynthetic process (GO:0045716)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of receptor-mediated endocytosis (GO:0048260)
      regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter (GO:0072369)
GO(MF)
  •   7 Terms
      RNA polymerase II core promoter proximal region sequence-specific DNA binding (GO:0000978)
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (GO:0001077)
      nucleic acid binding (GO:0003676)
      DNA binding (GO:0003677)
      single-stranded DNA binding (GO:0003697)
      RNA binding (GO:0003723)
      protein binding (GO:0005515)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010060
(v2.0)
HnrnpkNM_02527915387
197.465176.053127.401211.432405.723776.227313.1190.6083314.042768.462
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010175
(v1.0)
Hnrnpk15387
MGA0.92781
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010060
(v2.0)
Hnrnpk15387
902/3580.8186595/3580.6153458/3583.91151041/3582.862512/358-2.7423124/358-2.1155
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010060
(v2.0)
Hnrnpk15387
612/1951.1332323/1950.6093447/1954.714975/1953.63626/195-2.772785/195-1.7792
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010060
(v2.0)
Hnrnpk15387
44.108616227.23
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010060
(v2.0)
Hnrnpk15387
6.8521215.66
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010175
(v1.0)
HnrnpkNM_02527915387
182.93487.9897157.482281.226222.162
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010175
(v1.0)
HnrnpkNM_02527915387
42.465916.806128.714543.241551.2683
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010175
(v1.0)
HnrnpkNM_02527915387
191.27472.214895.9986
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010175
(v1.0)
HnrnpkNM_02527915387
186.70387.106267.2373
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010175
(v1.0)
HnrnpkNM_02527915387
6.925210.2152
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010175
(v1.0)
HnrnpkNM_02527915387
191.38571.225773.7436
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010175
(v1.0)
HnrnpkNM_02527915387
145.804271.535216.807
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010175
(v1.0)
HnrnpkNM_02527915387
36.732133.8834
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010175
(v1.0)
HnrnpkNM_02527915387
155.47448.3837
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010175
(v1.0)
HnrnpkNM_02527915387
126.07110.838
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010175
(v1.0)
10113H3091C10-3Hnrpk15387
U034849NAP095154-001Hnrpk;TC897535,TC897533,TC897529Q60577U,F,23.61213.44453.11643.70613.193.46243.2258
0010175
(v1.0)
11011H3107A02-3Mm.142872Hnrpk15387
U034849NAP095188-001Hnrpk;TC813621Q60577U,F,23.3293.2423.4473.63113.97774.01664.034
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010175
(v1.0)
1448176_a_atMm.142872HnrnpkNM_025279.215387
580.951011.575498.125968.31122.55
0010175
(v1.0)
1423684_atMm.142872HnrnpkNM_025279.215387
747.15617.45508.3751006.7894.725
0010175
(v1.0)
1460547_a_atMm.142872HnrnpkNM_025279.215387
2088.225611.651531.4753656.2252872.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010175
(v1.0)
A_51_P376358HnrpkNM_02527915387
11P0.8590.37P
0010175
(v1.0)
A_52_P336859HnrpkBC08932815387
11P0.3410.0759P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0010175
(v1.0)
Hnrnpk15387
21.54226