DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0014181
GeneNr6a1
SynonymsGcnf
NCNF
Desc.nuclear receptor subfamily 6, group A, member 1
LocusNM_001159548 chr2:38578894-38640035(-)
NM_010264 chr2:38578894-38781981(-)
NM_001159549 chr2:38578894-38640035(-)
DB links


Entrez 14536
MGI 1352459
Ensembl ENSMUSG00000063972
Vega OTTMUSG00000012347
Featureprotein-coding
GO(BP)
  •   7 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      multicellular organismal development (GO:0007275)
      spermatogenesis (GO:0007283)
      cell differentiation (GO:0030154)
      steroid hormone mediated signaling pathway (GO:0043401)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014638
(v2.0)
Nr6a1NM_001159548,NM_001159549,NM_01026414536
11.061250.552391.482867.399517.492211.1451.5449888.460120.462416.5239
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0014181
(v1.0)
Nr6a114536
Minor ZGA0.89901
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014638
(v2.0)
Nr6a114536
466/328-0.0062426/3280.260211/328-1.223944/328-1.5454189/3281.2519968/3280.9598
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014638
(v2.0)
Nr6a114536
149/142-0.4398169/1420.1346/142-0.859620/142-1.4515105/1421.5943455/1421.0753
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014638
(v2.0)
Nr6a114536
52.96835891.32
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014638
(v2.0)
Nr6a114536
26.18322990.29
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014181
(v1.0)
Nr6a1NM_001159548,NM_001159549,NM_01026414536
52.552163.133250.155112.12121.08516
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0014181
(v1.0)
Nr6a1NM_001159548,NM_001159549,NM_01026414536
54.9484.0451968.8797
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0014181
(v1.0)
Nr6a1NM_001159548,NM_001159549,NM_01026414536
53.634762.499365.3815
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0014181
(v1.0)
Nr6a1NM_001159548,NM_001159549,NM_01026414536
54.983.9897871.7082
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0014181
(v1.0)
Nr6a1NM_001159548,NM_001159549,NM_01026414536
46.435811.703514.1793
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0014181
(v1.0)
Nr6a1FR203438,FR207045,FR249393,NM_001159548,NM_001159549,NM_01026414536
79.5062112.047
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0014181
(v1.0)
Nr6a1NM_001159548,NM_001159549,NM_01026414536
26.787824.3396
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0014181
(v1.0)
Nr6a1NM_001159548,NM_001159549,NM_01026414536
37.787530.1175
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0014181
(v1.0)
5307U14666.1Mm.4577Nr6a114536
U022570NAP009556-001Nr6a1;TC911084Q64249U,F,23.47613.46083.56923.44853.45683.44783.3763
0014181
(v1.0)
6529H3026F12-3Mm.4577Nr6a114536
U022570NAP047304-1Nr6a1;TC832301Q64249U,F,24.14384.19243.37463.45983.40883.58053.5042
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0014181
(v1.0)
1421515_atMm.439703Nr6a1NM_010264.4,NM_001159548.1,NM_001159549.114536
078.0581.17500
0014181
(v1.0)
1428825_atMm.439703Nr6a1NM_010264.4,NM_001159548.1,NM_001159549.114536
486.80000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0014181
(v1.0)
A_52_P122664Nr6a1NM_01026414536
11P1.0160.9P
Proteome N/A