DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015716
GenePacsin2
SynonymsSyndapin II
Desc.protein kinase C and casein kinase substrate in neurons 2
LocusNM_001159510 chr15:83206037-83263280(-)
NM_001159509 chr15:83206037-83295036(-)
NM_011862 chr15:83206037-83263280(-)
DB links


Entrez 23970
MGI 1345153
Ensembl ENSMUSG00000016664
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016183
(v2.0)
Pacsin2NM_001159509,NM_001159510,NM_01186223970
25.0747139.901175.56894.298134.486816.817625.2112148.36436.117416.2159
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015716
(v1.0)
Pacsin223970
Maternal RNA0.95278
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016183
(v2.0)
Pacsin223970
642/4480.0062375/448-0.3719138/4481.8741371/4481.05545/448-1.2394331/448-1.0326
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016183
(v2.0)
Pacsin223970
330/2000.2087197/200-0.1373128/2002.8835331/2002.04449/200-2.2939119/200-1.3373
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016183
(v2.0)
Pacsin223970
85.23569193.67
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016183
(v2.0)
Pacsin223970
36.72323994.16
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015716
(v1.0)
Pacsin2NM_001159509,NM_001159510,NM_01186223970
145.448122.04770.200623.906817.7339
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015716
(v1.0)
Pacsin2NM_001159509,NM_001159510,NM_01186223970
472.231353.032261.362100.54655.9744
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015716
(v1.0)
Pacsin2NM_001159509,NM_001159510,NM_01186223970
152.089.17011133.156
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015716
(v1.0)
Pacsin2NM_001159509,NM_001159510,NM_01186223970
148.445120.821109.953
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015716
(v1.0)
Pacsin2NM_001159509,NM_001159510,NM_01186223970
527.835539.572
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015716
(v1.0)
Pacsin2NM_001159509,NM_001159510,NM_01186223970
152.1689.04451120.592
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015716
(v1.0)
Pacsin2NM_001159509,NM_001159510,NM_01186223970
64.994823.08325.0646
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015716
(v1.0)
Pacsin2NM_001159509,NM_001159510,NM_01186223970
153.774147.588
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015716
(v1.0)
Pacsin2NM_001159509,NM_001159510,NM_01186223970
78.603369.6799
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015716
(v1.0)
Pacsin2NM_001159509,NM_001159510,NM_01186223970
158.317139.829
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015716
(v1.0)
12062H3131H02-3Mm.23978Pacsin223970
U036475NAP097183-001Pacsin2;TC921482,TC910091,TC871057Q03717U,F,25.03175.10184.05984.23283.3053.65174.0971
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015716
(v1.0)
1417810_a_atMm.387390~Mm.23978Kcnb1~Pacsin2NM_008420.3~NM_011862.3,NM_001159509.1,NM_001159510.116500
23970
1978.353432.91567.4202.375880.725
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015716
(v1.0)
A_51_P390884Pacsin2NM_01186223970
11P1.4890.157P
0015716
(v1.0)
A_52_P229648Pacsin2NM_01186223970
11P0.7850.288P
0015716
(v1.0)
A_52_P545393Pacsin2NM_01186223970
11P0.8340.323P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0015716
(v1.0)
Pacsin223970
7111091321