DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017517
GeneRb1
SynonymspRb
Rb
Rb-1
Desc.retinoblastoma 1
LocusNM_009029 chr14:73595309-73725598(-)
DB links


Entrez 19645
MGI 97874
Ensembl ENSMUSG00000022105
Vega OTTMUSG00000036132
Featureprotein-coding
GO(BP)
  •   36 Terms
      G1/S transition of mitotic cell cycle (GO:0000082)
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      negative regulation of protein kinase activity (GO:0006469)
      cell cycle (GO:0007049)
      cell cycle arrest (GO:0007050)
      regulation of S phase of mitotic cell cycle (GO:0007090)
      regulation of mitotic cell cycle (GO:0007346)
      negative regulation of cell proliferation (GO:0008285)
      chromatin modification (GO:0016568)
      neuron differentiation (GO:0030182)
      sister chromatid biorientation (GO:0031134)
      neuron projection development (GO:0031175)
      maintenance of mitotic sister chromatid cohesion (GO:0034088)
      skeletal muscle cell differentiation (GO:0035914)
      neuron maturation (GO:0042551)
      enucleate erythrocyte differentiation (GO:0043353)
      regulation of lipid kinase activity (GO:0043550)
      myoblast differentiation (GO:0045445)
      positive regulation of macrophage differentiation (GO:0045651)
      negative regulation of cell cycle (GO:0045786)
      positive regulation of mitotic metaphase/anaphase transition (GO:0045842)
      negative regulation of smoothened signaling pathway (GO:0045879)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      digestive tract development (GO:0048565)
      cell morphogenesis involved in neuron differentiation (GO:0048667)
      negative regulation of epithelial cell proliferation (GO:0050680)
      striated muscle cell differentiation (GO:0051146)
      cell division (GO:0051301)
      neuron apoptotic process (GO:0051402)
      regulation of cell cycle (GO:0051726)
      protein localization to chromosome, centromeric region (GO:0071459)
      regulation of cohesin localization to chromatin (GO:0071922)
      negative regulation of transcription involved in G1/S phase of mitotic cell cycle (GO:0071930)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018030
(v2.0)
Rb1NM_00902919645
4.7135828.666247.617627.16086.129592.837473.2270732.80375.574732.8582
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017517
(v1.0)
Rb119645
Minor ZGA0.93561
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018030
(v2.0)
Rb119645
640/3510.3529496/3510.3817113/3511.9296259/3510.88819/351-2.0926151/351-1.806
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018030
(v2.0)
Rb119645
371/1310.9836261/1310.8733109/1313.2212242/1312.19525/131-2.435860/131-1.7009
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018030
(v2.0)
Rb119645
45.261513034.82
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018030
(v2.0)
Rb119645
9.129110.02
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017517
(v1.0)
Rb1NM_00902919645
29.790132.743420.21174.23762.22903
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017517
(v1.0)
Rb1NM_00902919645
546.838539.068270.07148.31323.1051
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017517
(v1.0)
Rb1NM_00902919645
31.14831.723835.7238
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017517
(v1.0)
Rb1NM_00902919645
30.403832.414724.2435
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017517
(v1.0)
Rb1NM_00902919645
567.488506.624
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017517
(v1.0)
Rb1NM_00902919645
31.16641.7001926.5894
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017517
(v1.0)
Rb1NM_00902919645
18.71294.091573.87006
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017517
(v1.0)
Rb1NM_00902919645
48.945676.8746
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017517
(v1.0)
Rb1NM_00902919645
21.78669.148
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017517
(v1.0)
Rb1NM_00902919645
8.6173745.5016
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017517
(v1.0)
4030C0912B09-3Mm.304Rb119645
U035762NAP096194-001Rb1;TC905115P13405U,F,24.16244.2233.14123.13222.66022.58732.7484
0017517
(v1.0)
9430H3081A11-3Mm.304Rb119645
U035762NAP037111-1Rb1;TC905114P13405U,F,22.2972.37912.4122.32462.31912.17152.2372
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017517
(v1.0)
1417850_atMm.273862Rb1NM_009029.219645
463.9718.425527.800
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017517
(v1.0)
A_51_P136888Rb1NM_00902919645
1 (0.912 to 1.103)1P1.122 (1.035 to 1.261)0.0092P
Proteome N/A