DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017520
GeneRbbp4
SynonymsCAF-1 p48 subunit
Desc.retinoblastoma binding protein 4
LocusNM_009030 chr4:128984344-129012614(-)
DB links


Entrez 19646
MGI 1194912
Ensembl ENSMUSG00000057236
Vega OTTMUSG00000009619
Featureprotein-coding
GO(BP)
GO(MF)
  •   1 Terms
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018034
(v2.0)
Rbbp4NM_00903019646
28.656634.365226.012845.655847.288115.67953.336418.727946.7122124.339
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017520
(v1.0)
Rbbp419646
Major ZGA0.9564
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018034
(v2.0)
Rbbp419646
762/3800.4899434/3800.0753255/3802.9859642/3802.080618/380-2.2799107/380-2.4112
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018034
(v2.0)
Rbbp419646
342/1270.911178/1270.3683239/1274.3876573/1273.479210/127-1.51850/127-1.9124
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018034
(v2.0)
Rbbp419646
60.439515738.5
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018034
(v2.0)
Rbbp419646
20.816711717.79
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017520
(v1.0)
Rbbp4NM_00903019646
35.721417.975233.999832.861237.6823
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017520
(v1.0)
Rbbp4FR094686,FR342343,FR352708,NM_00903019646
1008.84385.509800.665701.055971.847
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017520
(v1.0)
Rbbp4NM_00903019646
37.3510.4819.6113
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017520
(v1.0)
Rbbp4NM_00903019646
36.457317.794713.8855
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017520
(v1.0)
Rbbp4FR094686,FR342343,FR352708,NM_00903019646
216.51257.724
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017520
(v1.0)
Rbbp4NM_00903019646
37.371710.336515.2292
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017520
(v1.0)
Rbbp4NM_00903019646
31.478531.728832.2495
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017520
(v1.0)
Rbbp4FR094686,FR342343,FR352708,NM_00903019646
493.552531.986
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017520
(v1.0)
Rbbp4NM_00903019646
10.93822.94443
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017520
(v1.0)
Rbbp4NM_00903019646
1.56889.09675
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017520
(v1.0)
14800J0820F10-3Mm.12145Rbbp419646
U025550NAP056544-1Rbbp4;TC897680,TC897679,TC897675,TC897674,TC897673,TC897671,TC897670,TC897669,TC897668,TC897667Q60972U,F,23.943.89313.75123.91454.34074.29114.3547
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017520
(v1.0)
1454875_a_atMm.12145Rbbp4NM_009030.319646
106.65117.82588.825103.725105.75
0017520
(v1.0)
1434892_x_atMm.12145Rbbp4NM_009030.319646
2292.853055.952186.92868.9252745.375
0017520
(v1.0)
1454791_a_atMm.12145Rbbp4NM_009030.319646
0282.95131.6250179.025
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017520
(v1.0)
A_51_P307325Rbbp4NM_00903019646
11P0.7430.206P
0017520
(v1.0)
A_52_P296810Rbbp4NM_00903019646
11P0.6010.161P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017520
(v1.0)
Rbbp419646
3807150