DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0017556
GeneRbm38
SynonymsRnpc1
Seb4l
Desc.RNA binding motif protein 38
LocusNM_019547 chr2:172847403-172860232(+)
DB links


Entrez 56190
MGI 1889294
Ensembl ENSMUSG00000027510
Vega OTTMUSG00000016681
Featureprotein-coding
GO(BP)
  •   11 Terms
      mRNA processing (GO:0006397)
      DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest (GO:0006977)
      DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator (GO:0006978)
      cell cycle (GO:0007049)
      cell cycle arrest (GO:0007050)
      negative regulation of cell proliferation (GO:0008285)
      RNA splicing (GO:0008380)
      regulation of myotube differentiation (GO:0010830)
      cell differentiation (GO:0030154)
      regulation of RNA splicing (GO:0043484)
      3'-UTR-mediated mRNA stabilization (GO:0070935)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018072
(v2.0)
Rbm38NM_01954756190
6.28359211.767373.29646.757312.155327.84991.71619751.87724.374626.0084
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0017556
(v1.0)
Rbm3856190
Minor ZGA0.98835
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018072
(v2.0)
Rbm3856190
850/627-0.0737433/627-0.649184/6271.8125487/6270.963933/627-2.1566348/627-1.4448
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018072
(v2.0)
Rbm3856190
393/2230.3034181/223-0.4151125/2232.701355/2231.989917/223-1.5999163/223-1.0446
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018072
(v2.0)
Rbm3856190
74.881118640.26
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018072
(v2.0)
Rbm3856190
18.381710517.51
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017556
(v1.0)
Rbm38NM_01954756190
220.204259.55534.87958.455841.24924
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0017556
(v1.0)
Rbm38FR283095,NM_01954756190
277.264293.8348.021732.56892.45487
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0017556
(v1.0)
Rbm38NM_01954756190
230.2432.29797283.18
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0017556
(v1.0)
Rbm38NM_01954756190
224.74256.949558.495
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0017556
(v1.0)
Rbm38FR283095,NM_01954756190
297.351651.457
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0017556
(v1.0)
Rbm38NM_01954756190
230.3772.2665612.539
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0017556
(v1.0)
Rbm38NM_01954756190
32.2938.1644517.0924
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0017556
(v1.0)
Rbm38FR283095,NM_01954756190
14.534921.1515
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0017556
(v1.0)
Rbm38NM_01954756190
128.79172.07
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0017556
(v1.0)
Rbm38NM_01954756190
888.313244.022
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017556
(v1.0)
14904J0904H02-3Mm.3865Rnpc156190
U002908NAP099719-001Rnpc1;Seb4l;TC882550,TC831568,TC831567Q62176U,F,24.84064.99454.42484.13063.69423.70733.494
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0017556
(v1.0)
1421265_a_atMm.485782Rbm38NM_019547.256190
386.7619.225477.264.433.6
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0017556
(v1.0)
A_51_P262670Rnpc1NM_01954756190
11P0.8830.43P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0017556
(v1.0)
Rbm3856190
201402