DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018015
GeneRpl13a
SynonymsTstap198-7
tum-antigen
tum-transplantation antigen P198
Desc.ribosomal protein L13A
LocusNM_009438 chr7:52380933-52384115(-)
DB links


Entrez 22121
MGI 1351455
Ensembl ENSMUSG00000074129
Vega OTTMUSG00000016498
Featureprotein-coding
GO(BP)
GO(MF)
  •   1 Terms
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018542
(v2.0)
Rpl13aNM_009438,NR_001277,NR_03958122121
1300.7911446.9551121125252352048283.473068041498401993899925.96
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018015
(v1.0)
Rpl13a22121
MGA0.99762
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018542
(v2.0)
Rpl13a22121
800/4620.2787411/462-0.2843909/4624.54162218/4623.587428/462-1.9489214/462-1.7026
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018542
(v2.0)
Rpl13a22121
357/1940.3654167/194-0.3305374/1944.4644972/1943.63919/194-2.250871/194-2.0265
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018542
(v2.0)
Rpl13a22121
83.230225932.14
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018542
(v2.0)
Rpl13a22121
26.610411922.36
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018015
(v1.0)
Rpl13aNM_00943822121
125.15968.018223.966679.36299.855
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018015
(v1.0)
Rpl13aFR162933,FR304431,FR332397,NM_009438,NR_00000222121
93807.52498037173901.4635e+061.28906e+06
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018015
(v1.0)
Rpl13aNM_00943822121
130.866650.93874.2091
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018015
(v1.0)
Rpl13aNM_00943822121
127.73867.33571.1775
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018015
(v1.0)
Rpl13aNM_00943822121
22.726731.9571
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018015
(v1.0)
Rpl13aNM_00943822121
130.942642.02278.0651
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018015
(v1.0)
Rpl13aNM_00943822121
207.357655.949612.362
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018015
(v1.0)
Rpl13aFR162933,FR304431,FR332397,NM_009438,NR_00000222121
1.40084e+061.11247e+06
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018015
(v1.0)
Rpl13aNM_00943822121
31.1694165.102
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018015
(v1.0)
Rpl13aNM_00943822121
129.17376.3637
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018015
(v1.0)
3456C0663C12-3Mm.13020Rpl13a22121
1.93522.40742.09492.41512.40182.432.3324
0018015
(v1.0)
18860L0229G12-3Mm.13020Rpl13a22121
U028516NAP093279-001TC798115,TC798111,TC798110P19253U,F,23.50873.46833.62654.28384.44.2854.2918
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018015
(v1.0)
1417608_a_atMm.180458Rpl13aNM_009438.422121
685.35283.425575.153697.82952.425
0018015
(v1.0)
1435873_a_atMm.485900~Mm.180458Zfp526~Rpl13a~NM_009438.4210172
22121
1752.7339.651809.32510901.37329.225
0018015
(v1.0)
1455485_x_atMm.180458Rpl13aNM_009438.422121
1473.75338.61278.48351.2255493.075
0018015
(v1.0)
1433928_a_atMm.180458Rpl13aNM_009438.422121
373.3711.45536.2252316.2251543.35
0018015
(v1.0)
1455001_x_atMm.180458Rpl13aNM_009438.422121
892.55851.6751107.1754500.253005.375
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018015
(v1.0)
A_51_P235311Rpl13aNM_00943822121
11P0.2330.0468P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018015
(v1.0)
Rpl13a22121
21.5121.52