DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0018447
GeneSdc1
SynonymsCD138
syn-1
Synd
Synd1
Desc.syndecan 1
LocusNM_011519 chr12:8778202-8800493(+)
DB links


Entrez 20969
MGI 1349162
Ensembl ENSMUSG00000020592
Vega OTTMUSG00000033390
Featureprotein-coding
GO(BP)
  •   2 Terms
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018987
(v2.0)
Sdc1NM_01151920969
55.926657.079527.808217.672511.761320.396656.222729.459414.618924.9842
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0018447
(v1.0)
Sdc120969
Maternal RNA0.96738
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018987
(v2.0)
Sdc120969
820/4420.378524/4420.129162/4422.1228507/4421.5239376/4421.81481864/4421.4748
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2018987
(v2.0)
Sdc120969
471/2040.6916266/2040.2655158/2043.1582468/2042.5146227/2042.18911086/2041.808
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018987
(v2.0)
Sdc120969
58.142117134
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2018987
(v2.0)
Sdc120969
15.924912312.95
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018447
(v1.0)
Sdc1NM_01151920969
59.34819.344713.15838.124840.1224
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0018447
(v1.0)
Sdc1NM_01151920969
150.11649.767931.501919.021789.4717
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0018447
(v1.0)
Sdc1NM_01151920969
62.053820.452921.1055
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0018447
(v1.0)
Sdc1NM_01151920969
60.570719.150521.8301
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0018447
(v1.0)
Sdc1NM_01151920969
19.682818.1019
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0018447
(v1.0)
Sdc1NM_01151920969
62.089920.172823.9425
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0018447
(v1.0)
Sdc1NM_01151920969
12.18267.8448210.1372
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0018447
(v1.0)
Sdc1NM_01151920969
6.493988.78328
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0018447
(v1.0)
Sdc1NM_01151920969
0.6340.95981
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0018447
(v1.0)
Sdc1NM_01151920969
58.081565.4081
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018447
(v1.0)
328C0101C01-3Mm.2580Sdc120969
Sdc13.45463.35653.23833.26713.20543.25173.2714
0018447
(v1.0)
5953H3013F05-3Mm.2580Sdc120969
U013744NAP003401-001Sdc1;TC940506P18828U,F,24.19783.81093.18063.06442.41482.68012.5138
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0018447
(v1.0)
1415943_atMm.2580Sdc1NM_011519.220969
332.45485.275199.800
0018447
(v1.0)
1437279_x_atMm.2580Sdc1NM_011519.220969
457620.275203.9566.6523.675
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0018447
(v1.0)
A_52_P479269Sdc1NM_01151920969
11P1.3610.199P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0018447
(v1.0)
Sdc120969
302303