DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2018942

Gene

Scmh1

Synonyms

Scml3

Description

sex comb on midleg homolog 1

Locus

NM_001159630 UCSC: chr4:120077886-120202804(+) OLP: chr4:120077886-120202804(+)
NM_013883 UCSC: chr4:120077886-120202804(+) OLP: chr4:120077886-120202804(+)

DB links

Entrez 29871
MGI 1352762
Ensembl ENSMUSG00000000085
Vega OTTMUSG00000008809

Feature

protein-coding

GO_BP

7 Terms

GO_MF

1 Terms

GO_CC

2 Terms

KEGG

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2018942 (v2.0)	Scmh1	NM_001159630,NM_013883	29871	14.1444	30.3352	37.7341	7.9302	4.79919	3.06251	5.74695	53.745	5.06176	4.30754

SPR_Histone_Erkek_5KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2018942 (v2.0)	Scmh1	29871	570/350	0.1903	358/350	-0.0834	83/350	1.493	224/350	0.6835	66/350	-0.3444	504/350	-0.0731

SPR_Histone_Erkek_2KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2018942 (v2.0)	Scmh1	29871	308/160	0.4297	171/160	-0.0201	76/160	2.4405	195/160	1.6016	20/160	-0.9089	166/160	-0.5421

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2018942 (v2.0)	Scmh1	29871	47.5199	148	32.11

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2018942 (v2.0)	Scmh1	29871	17.2115	114	15.1

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0018403 (v1.0)	11338	H3113B01-3		Scmh1	29871	U004749	NAP097139-001	Scmh1;Scml1;Scml3;	TC920789,TC920787,TC920786,TC867342	Q9JME0	U,F,2	4.2701	4.0642	4.1521	4.3047	4.8852	4.5492	4.8148

N/A

N/A

N/A